FB2024_03 , released June 25, 2024
Aberration: Dmel\Df(3L)9-56
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General Information
Symbol
Df(3L)9-56
Species
D. melanogaster
Name
FlyBase ID
FBab0002291
Feature type
chromosomal_deletion
Also Known As
9-56
Computed Breakpoints include

80F;80F

Features within 80F--80F
Genomic Maps
Sequence coordinates
3L:27,157,999..27,268,445 (Df(3L)9-56:bk1)
(Cook, 2019.5.6)
3L:27,967,244..28,112,227 (Df(3L)9-56:bk2)
(Cook, 2019.5.6)
Member of large scale dataset(s)
Nature of Aberration
Cytological Order
Progenitor
C(3R)RM*
C(3L)RM*
Mutagen
detachment
Class of aberration (relative to wild type)
chromosomal_deletion
(FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_deletion
(Schulze et al., 2001, Marchant and Holm, 1988)
Breakpoints

[];[]

(Schulze et al., 2001, Marchant and Holm, 1988)
Causes alleles
Carries alleles
Transposon Insertions
Formalized genetic data

vtd << bk1 << RpL15 << l(3)80Fj << bk2

Genetic mapping information
Comments

The 3L:27157999..27268445 release 6 coordinates of the left breakpoint are estimates. The left extent corresponds to the right end of vtd, which Syrzycka et al. (FBrf0242319) say is not deleted. The right extent corresponds to the right end of RpL15, which Syrzycka et al. (FBrf0242319) say is deleted.

(Cook, 2019.5.6)

The 3L:27967244..28112227 release 6 coordinates of the right breakpoint are estimates. The left extent corresponds to the left end of CG17514, which Syrzycka et al. (FBrf0242319) say is deleted. Because Df(3L)9-56 extends into centric heterochromatin according to Syrzycka et al. (FBrf0242319), the right extent is shown arbitrarily as the right end of chromosome 4 genome assembly.

(Cook, 2019.5.6)

This deletion removes a single ribosomal protein-coding gene (though other genes are also removed).

(Marygold et al., 2007)
Comments on Cytology

At least a major portion of h50 is absent in this deficiency. It is not clear whether or not h49 and h51 are affected.

(Koryakov et al., 2002)

Left limit of break 1 from non-inclusion of vtd (FBrf0048227) Right limit of break 1 from inclusion of l(3)80Fi (FBrf0048227) Left limit of break 2 from inclusion of l(3)80Fi (FBrf0048227) Right limit of break 2 from polytene analysis (citation unavailable)

Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Genes NOT Deleted / Disrupted
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location
Phenotypic Data
In combination with other aberrations

Inferred to overlap with: Df(3L)1-166.

(Syrzycka et al., 2019)

Inferred to overlap with: In(3L)C90.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)2-30.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)gamma-26.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)K-2.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)AAA.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)10A-301.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)2A-54.

(Syrzycka et al., 2019)

Inferred to overlap with: Df(3L)7B-75.

(Syrzycka et al., 2019)
NOT in combination with other aberrations

Flies heterozygous for the deletion show a Minute bristle phenotype.

(Marygold et al., 2007)

Homozygotes show a first larval instar lethal phase.

(Schulze et al., 2005)
Stocks (2)
Notes on Origin
Discoverer
 
Balancer / Genotype Variants of the Aberration
 
Separable Components
 
Other Comments
 
Synonyms and Secondary IDs (4)
Reported As
Symbol Synonym
9-56
(Syrzycka et al., 2019, Hallson et al., 2012)
Df 9-56
(Sinclair et al., 2000)
Df(3L)9-56
(Cook, 2019.5.6, Syrzycka et al., 2019)
Df(9-56)
(Schulze et al., 2001)
Name Synonyms
Secondary FlyBase IDs
    References (12)