FlyBase Aberration Report: Dmel\Df(3R)p40

FB2024_03 , released June 25, 2024

FB2024_03 , released June 25, 2024

Aberration: Dmel\Df(3R)p40

General Information

Symbol

Df(3R)p40

Species

D. melanogaster

Name

Deficiency (3R) pink

FlyBase ID

FBab0002861

Feature type

chromosomal_deletion

Also Known As

Df(3R)p⁴⁰

Computed Breakpoints include

84E8-84E9;85B6

Features within 84E8--85B6

Sequence coordinates

Member of large scale dataset(s)

Nature of Aberration

Cytological Order

Df:84E8--9 ;85B6 + T:55 ;75 + In:64 ;90

(Kemphues et al., 1983)

Progenitor

Mutagen

(Kemphues et al., 1980)

Class of aberration (relative to wild type)

chromosomal_deletion

(FlyBase, 2007)

Class of aberration (relative to progenitor)

chromosomal_deletion

Breakpoints

55;64;75;84E8-84E9;85B6;90

(Kemphues et al., 1983)

84E10-84F1;85B6

(Reuter et al., 1986)

84E8-84E9;85B5-85B6

(Ring and Martinez Arias, 1993, Baker et al., 1991)

84E8-84E9;85B6

(Pauli et al., 1995)

Causes alleles

Carries alleles

Transposon Insertions

Formalized genetic data

l(3)84Eg << bk1 << l(3)84Ef << bk2

Genetic mapping information

Comments

Comments on Cytology

Limits of break 1 from polytene analysis (FBrf0054129) Limits of break 2 from polytene analysis (FBrf0045055)

Sequence Crossreferences

DDBJ / EMBL / GenBank

DNA sequence

Protein sequence

Gene Deletion and Duplication Data

Genes Deleted / Disrupted

Complementation Data

Completely deleted / disrupted

(Baker et al., 1991)

(Zhou et al., 2003)

(Porter and Rawls, 1984)

(Brown and Castelli-Gair Hombria, 2000, Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Kemphues et al., 1980)

(Ring and Martinez Arias, 1993, Baker et al., 1991)

(Babcock et al., 2003)

Partially deleted / disrupted

Molecular Data

Completely deleted

Partially deleted

Genes NOT Deleted / Disrupted

Complementation Data

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Baker et al., 1991)

(Reuter et al., 1986)

Molecular Data

Genes Duplicated

Complementation Data

Completely duplicated

Partially duplicated

Molecular Data

Completely duplicated

Partially duplicated

Genes NOT Duplicated

Complementation Data

Molecular Data

Affected Genes Inferred by Location (0)

If no genes are listed here, it may be because the affected region is very large. The JBrowse insert above may show an error for the same reason, and other FlyBase tools such as CytoSearch may also fail for large regions. You can contact FlyBase for more help.
In this case, the "Export to Hitlist" button at left will also be disabled.

Related Comments

Does not affect either the "roe" (roughened eye) or "rn" (rotund) functions of the rn locus.

(Baker et al., 1991)

Phenotypic Data

In combination with other aberrations

NOT in combination with other aberrations

Heterozygosity for this deletion has no effect on the mutant ovarian phenotype of ovo^D2.

(Pauli et al., 1995)

Stocks (1)

106594

Df(3R)p40, red¹ e¹/TM3, Sb¹

Notes on Origin

Discoverer

Balancer / Genotype Variants of the Aberration

Separable Components

Other Comments

The Df(3R)p40 chromosome acts as a dominant weak suppressor of telomeric silencing (assayed using the effect of the chromosome on the eye colour phenotype of flies carrying "P{w^var}KR3-2", a stable "brown-red" variant of the P{3'WP-2,w^var}2Lt insertion), but this is a false positive result (the suppressor is not within the bounds of the deficient region) because the region of the deficiency is covered by one or more nonsuppressing deficiencies.

(Mason et al., 2004)

Also T:55 ;75 + In:64 ;90.

Synonyms and Secondary IDs (5)

Reported As

Symbol Synonym

Df(3L)p40

(Moore et al., 1990)

Df(3R)p40

(Bejarano et al., 2008)

Df(3R)p⁴⁰

(Baker et al., 1991, Reuter et al., 1986, Kemphues et al., 1980)

Dfp40

(Brown and Castelli-Gair Hombria, 2000)

Name Synonyms

Deficiency (3R) pink

Secondary FlyBase IDs

References (18)

Report Sections