FB2024_03 , released June 25, 2024
Allele: Ecol\lacZsim.P3.7
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General Information
Symbol
Ecol\lacZsim.P3.7
Species
E. coli
Name
FlyBase ID
FBal0041951
Feature type
allele
Associated gene
Associated Insertion(s)
Carried in Construct
Also Known As
sim-lacZ
Transgenic product class
Nature of the Allele
Transgenic product class
Progenitor genotype
Carried in construct
Cytology
Description

lacZ expression from a weak P-element promoter governed by 3.7kb fragment of sim promoter, including five copies of the ACGTG motif.

A 3.7kb BamHI-EcoRI fragment which contains the sim early promoter and 5' regulatory elements plus sequence encoding the N-terminal 18 amino acids of sim is fused in-frame to lacZ.

Allele components
Component
Use(s)
Encoded product / tool
Mutations Mapped to the Genome
Curation Data
Type
Location
Additional Notes
References
Variant Molecular Consequences
Associated Sequence Data
DNA sequence
Protein sequence
 
Expression Data
Reporter Expression
distribution deduced from reporter
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Information
Statement
Reference

In stage 8 embryos, reporter expression is observed in the stomodeal opening, posterior midgut, and proctodeum. At stage 11, expression is observed in the two rows of cells at the midline of the prospective foregut and hindgut epithelium. Similar rows of cells are seen in the primordium of the posterior region of the midgut. No expression is seen in the visceral muscles or their precursors that overlie the epithelial foregut and hindgut, indicating that sim reporter expression is in the ectodermal and endodermal gut but not in mesodermal tissues. The cells expressing sim reporter in the embryonic gut do not delaminate from the ectodermal layer and remain among the epithelial cells of the gut.

sim reporter expression is observed in stage 8 embryos in the stomodeum, posterior midgut, and proctodeum. Staining is observed in two rows of cells at the midline of the prospective foregut and hindgut epithelium and in similar cells in the primordium of the posterior region of the midgut. Expression was found to be in the ectoderm of these organs and not in the muscle layers. While ventral midline cells delaminate at stage 11 to translocate to the proper position in the CNS, the sim expressing cells in the gut do not delaminate but remain among the epithelial cells of the gut.

 
Reflects expression of
Reporter construct used in assay
Human Disease Associations
Disease Ontology (DO) Annotations
Models Based on Experimental Evidence ( 0 )
Disease
Evidence
References
Modifiers Based on Experimental Evidence ( 0 )
Disease
Interaction
References
Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
 
Disease-implicated variant(s)
 
Phenotypic Data
Phenotypic Class
Phenotype Manifest In
Detailed Description
Statement
Reference
External Data
Interactions
Show genetic interaction network for Enhancers & Suppressors
Phenotypic Class
Phenotype Manifest In
Additional Comments
Genetic Interactions
Statement
Reference
Xenogenetic Interactions
Statement
Reference
Complementation and Rescue Data
Comments
Images (0)
Mutant
Wild-type
Stocks (0)
Notes on Origin
Discoverer
External Crossreferences and Linkouts ( 0 )
Synonyms and Secondary IDs (3)
Reported As
Symbol Synonym
Ecol\lacZsim.P3.7
lacZsim.3.7
lacZsim.P3.7
Name Synonyms
Secondary FlyBase IDs
  • FBal0041949
References (19)