Please see the JBrowse view of Dmel\VepD for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.49
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.51
0.85 (northern blot)
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\VepD using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Transcripts are expressed in ventral cells of the blastoderm embryo. The posterior border coincides with the posterior limit of the ventral furrow. Anteriorly, expression extends up to the anterior pole. The lateral expression boundaries are sharp, not fuzzy. Expression continues in the mesoderm at later stages. No expression is seen after germ band retraction.
JBrowse - Visual display of RNA-Seq signals
View Dmel\VepD in JBrowse2-99
2-104.1
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
New annotation (CG33200) in release 3 of the genome annotation.
Identification: isolated from a subtractive cDNA library enriched in sequences expressed in the mesoderm.
Source for merge of: ventrally-expressed-protein-D anon- EST:CL57
Source for merge of ventrally-expressed-protein-D anon- EST:CL57 was sequence comparison ( date:030620 ).
Source for identity of: VepD ventrally-expressed-protein-D