FB2024_04 , released June 25, 2024
Human Disease Model Report: Kleefstra syndrome 1
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General Information
Name
Kleefstra syndrome 1
FlyBase ID
FBhh0000556
Disease Ontology Term
Parent Disease
Overview

This report describes Kleefstra syndrome 1 (KLEFS1), which is a subtype of Kleefstra syndrome; KLEFS1 exhibits an autosomal dominant pattern of inheritance. OMIM also includes KLEFS1 in the phenotypic series for autosomal dominant intellectual disability (FBhh0000127). Originally mapped to a small deletion on chromosome 9, it has been determined that the specific gene implicated in Kleefstra syndrome is euchromatic histone methyltransferase 1 (EHMT1). There is a single moderate-scoring ortholog of EHMT1 in Drosophila, G9a, for which loss-of-function mutations, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated. Dmel\G9a is also orthologous to a second gene in human, EHMT2.

The human EHMT1 gene has not been introduced into flies.

Animals homozygous for amorphic alleles of Dmel\G9a are viable and fertile. Larvae exhibit locomotor defects and abnormalities in dendrite development. Adults exhibit defects in non-associative learning and courtship memory; memory is restored by G9a expression during adulthood. A small number of physical and genetic interactions have been described for Dmel\G9a; see below and in the G9a gene report. It is proposed that G9a/EHMT1 plays a key role in a highly conserved epigenetic network that impacts cognition and memory.

[updated Jan. 2018 by FlyBase; FBrf0222196]

Disease Summary Information
Parent Disease Summary: Kleefstra syndrome
Symptoms and phenotype

Kleefstra syndrome is characterized by developmental delay and variable intellectual disability, with other symptoms characteristic of the specific subtype.

Specific Disease Summary: Kleefstra syndrome 1
OMIM report

[KLEEFSTRA SYNDROME 1; KLEFS1](https://omim.org/entry/610253)

Human gene(s) implicated

[EUCHROMATIC HISTONE METHYLTRANSFERASE 1; EHMT1](https://omim.org/entry/607001)

Symptoms and phenotype

Kleefstra syndrome 1 is characterized by developmental delay and intellectual disability, severely limited or absent speech, hypotonia, and characteristic facial features; heart defects or seizures are observed in some cases.

Genetics

Kleefstra syndrome 1 is caused by heterozygous mutation in the EHMT1 gene, which is located within the region of the chromosome 9q34.3 deletion that was originally associated with this syndrome. [from MIM:610253; 2018.02.02]

Cellular phenotype and pathology
Molecular information

EHMT1 (euchromatic histone methyltransferase 1) is a component of the E2F6 complex, which represses transcription and contributes to silencing of specific genes in quiescent cells. [from MIM:607001, MIM:602944; 2017.06.12]

External links
Disease synonyms
9q subtelomeric deletion syndrome
chromosome 9q34.3 deletion syndrome
chromosome 9q deletion syndrome
Kleefstra syndrome
Kleefstra syndrome phenotypic spectrum
KLEFS1
KSS
Ortholog Information
Human gene(s) in FlyBase
    Human gene (HGNC)
    D. melanogaster ortholog (based on DIOPT)
    Comments on ortholog(s)

    Many to one: 2 human to 1 Drosophila.

    Other mammalian ortholog(s) used
      D. melanogaster Gene Information (1)
      Gene Snapshot
      G9a (G9a) encodes a histone-lysine methyltransferase involved in epigenetic regulation. It contributes to multiple processes including gene expression, dendrite morphogenesis, larval locomotory behavior as well as short and long-term memory. [Date last reviewed: 2019-03-07]
      Gene Groups / Pathways
      Comments on ortholog(s)

      Moderate-scoring ortholog of human EHMT1 and EHMT2 (1 Drosophila to 2 human); Dmel\G9a shares 26-28% identity and 41-42% similarity with the human genes.

      Orthologs and Alignments from DRSC
      DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
      Other Genes Used: Viral, Bacterial, Synthetic (0)
        Summary of Physical Interactions (8 groups)
        protein-protein
        Interacting group
        Assay
        References
        anti tag coimmunoprecipitation, western blot, molecular sieving, anti bait coimmunoprecipitation, Identification by mass spectrometry
        anti tag coimmunoprecipitation, anti tag western blot
        anti tag coimmunoprecipitation, western blot
        enzymatic study, autoradiography
        pull down, anti tag western blot
        pull down, anti tag western blot
        tandem affinity purification, Identification by mass spectrometry
        pull down, anti tag western blot
        Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
        Models Based on Experimental Evidence ( 3 )
        Modifiers Based on Experimental Evidence ( 0 )
        Allele
        Disease
        Interaction
        References
        Alleles Representing Disease-Implicated Variants
        Genetic Tools, Stocks and Reagents
        Sources of Stocks
        Contact lab of origin for a reagent not available from a public stock center.
        Bloomington Stock Center Disease Page
        Related mammalian, viral, bacterial, or synthetic transgenes
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila transgenes
        Allele
        Transgene
        Publicly Available Stocks
        RNAi constructs available
        Allele
        Transgene
        Publicly Available Stocks
        Selected Drosophila classical alleles
        Allele
        Allele class
        Mutagen
        Publicly Available Stocks
        amorphic allele - molecular evidence
        ends-out gene targeting
        Delta2-3 transposase
        Delta2-3 transposase
        P-element activity
        References (18)