FB2024_04 , released June 25, 2024
Human Disease Model Report: SLC5A6-related disorders
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General Information
Name
SLC5A6-related disorders
FlyBase ID
FBhh0001559
Disease Ontology Term
Parent Disease
OMIM
Overview

This report describes SLC5A6-related disorders, a range of disorders resulting from an inability to effectively uptake biotin, pantothenic acid, and lipoic acid. These disorders include peripheral motor neuropathy, childhood-onset, biotin-responsive (COMNB; MIM:619903), sodium-dependent multivitamin transporter deficiency (SMVTD; MIM:618973), and a potential new disorder, spontaneously remitting developmental delay with brain cysts' (SRDDBC), which is phenotypically intermediate between COMNB and SMVTD. The gene implicated is SLC5A6, which encodes the sodium-dependent multivitamin transporter. There are two high-scoring fly orthologs, Dmel\CG10444 and CG32669, as well as several moderately-scoring orthologs paralogous to those two genes. Only Dmel\CG10444 has been analyzed in the context of a human disease model, and amorphic alleles, RNAi-targeting constructs, and alleles caused by insertional mutagenesis have been generated have been generated for this gene. Additionally, a construct reflecting a variant implicated in disease, Dmel\CG10444;p.S56F (orthologous to Hsap\SLC5A6;p.S74F, a variant associated with SRDDBC) has been generated. See the 'Disease-Implicated Variants' table below.

UAS constructs of the wild-type human Hsap\SLC5A6 gene have been introduced into flies, but have not been characterized in the context of this disease model.

Homozygous amorphic alleles of Dmel\CG10444 are lethal. Lethality can be rescued by overexpression of wild-type Dmel\CG10444, but not by either wild-type Hsap\SLC5A6, or by a construct of Dmel\CG10444 bearing a disease-implicated variant (FBrf0258598).

[updated Apr. 2024 by FlyBase; FBrf0222196]

Disease Summary Information
Disease Summary: SLC5A6-related disorders
OMIM report
Human gene(s) implicated
Symptoms and phenotype

SLC5A6-related disorders range from peripheral motor neuropathy, childhood-onset, biotin-responsive (COMNB; MIM:619903) to sodium-dependent multivitamin transporter deficiency (SMVTD; MIM:618973). COMNB symptoms are limited largely to peripheral motor neuropathy, presenting at around 10 years of age. SMVTD presents with symptoms affecting multiple organs and can include gastrointestinal hemorrhage, brain atrophy, and global developmental delay, at birth or in infancy, and can be fatal if untreated. Both disorders can be treated with replacement therapy of the nutrients biotin, pantothenic acid, and lipoic acid. A potential disorder, with phenotypic severity between COMNB and SMVTD has been identified and tentatively named 'spontaneously remitting developmental delay with brain cysts' (SRDDBC) (Utsuno, et al., 2024, pubmed:38012394; FBrf0258598).

Genetics

The diseases associated with SLC5A6 exhibit autosomal recessive or compound heterozygous patterns of inheritance. [from MIM:619903 and MIM:618973, 2024.02.20]

Cellular phenotype and pathology
Molecular information

The SLC5A6 gene encodes a transmembrane protein that is responsible for the transport of the water-soluble vitamins biotin and pantothenic acid and the metabolite lipoate in both the digestive system and across the blood-brain barrier (summary by Sabui et al. pubmed:29669219, 2018 and Byrne et al., 2019 pubmed:31754459). [from MIM:604024; 2024.02.20]

External links
Disease synonyms
SLC56A-related disorders
Ortholog Information
Human gene(s) in FlyBase
Human gene (HGNC)
Comments on ortholog(s)

Many to many (many human to many Drosophila); SLC5A6 has two high-scoring Drosophila orthologs, CG10444 and CG32669, and several moderate-scoring Drosophila orthologs.

Other mammalian ortholog(s) used
    D. melanogaster Gene Information (2)
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human SLCA56, SLC5A8, SLC5A12, and SLC5A5 (many Drosophila to many human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Cellular component (GO)
    Gene Groups / Pathways
    Comments on ortholog(s)

    High-scoring ortholog of human SLCA56, SLC5A12, SLC5A8, and SLC5A5 (many Drosophila to many human).

    Orthologs and Alignments from DRSC
    DIOPT - DRSC Integrative Ortholog Prediction Tool - Click the link below to search for orthologs in Humans
    Other Genes Used: Viral, Bacterial, Synthetic (0)
      Summary of Physical Interactions (0 groups)
      Alleles Reported to Model Human Disease (Disease Ontology) (3 alleles)
      Models Based on Experimental Evidence ( 2 )
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Models Based on Experimental Evidence ( 1 )
      Allele
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Alleles Representing Disease-Implicated Variants
      Genetic Tools, Stocks and Reagents
      Sources of Stocks
      Contact lab of origin for a reagent not available from a public stock center.
      Bloomington Stock Center Disease Page
      Related mammalian, viral, bacterial, or synthetic transgenes
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila transgenes
      Allele
      Transgene
      Publicly Available Stocks
      RNAi constructs available
      Allele
      Transgene
      Publicly Available Stocks
      Selected Drosophila classical alleles
      Allele
      Allele class
      Mutagen
      Publicly Available Stocks
      CRISPR/Cas9
      References (5)