FB2024_03 , released June 25, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000098894
Interaction Network
Interactions Browser links
dock network
robo1 network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0167957-1.Y2H
Reference
Description
physical association
Assay
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
dock 

Dock

bait

fused to LexA DNA-binding domain

dock 

Robo

prey

fused to B42 activation domain

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
intracellular domain
sufficient binding region
aa 939-1395
proline-rich region 1
necessary binding region
aa 1064-1130
proline-rich region 2
necessary binding region
aa 1247-1295
dock 
SH3 domains 1 and 2
sufficient binding region
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Two-hybrid system: yeast LexA-BD/B42-AD

Source was yeast cell line; bait produced as transgenic fusion protein; prey produced as transgenic fusion protein (prey was previously cloned reagent).

robo interacts with dock, but not Pak, Rac1, Rac2 or Mtl in this assay.

FBrf0167957-11.PD.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Robo

bait

GST tag

dock 

Dock

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
intracellular domain
sufficient binding region
aa 939-1395
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey derived from transfected HEK293T cell extract.

robo can bind ena and dock without any apparent competition between the two.

FBrf0167957-2.PD.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Robo

bait

His tag

dock 

Dock

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
proline-rich region 1
necessary binding region
aa 1064-1130
proline-rich region 2
necessary binding region
aa 1247-1295
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Cells were treated with the robo ligand sli for 10 minutes before the pull down assay.

Source was cell extract of HEK293T cell line; bait produced from transfected construct; prey produced from transfected construct.

sli stimulates the interaction of robo with dock.

FBrf0167957-3.coIP.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Robo

bait

Myc tag

dock 

Dock

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
proline-rich region 1
necessary binding region
aa 1064-1130
proline-rich region 2
necessary binding region
aa 1247-1295
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

FBrf0194920-6.coIP.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Robo

bait

MYC tag

dock 

Dock

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (2)