FB2024_03 , released June 25, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000099309
Interaction Network
Interactions Browser links
Sfmbt network
His4 network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0190547-19.FPS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

dSfMBT

bait
His4 

H4

prey

fluorescein label

His4 
His4 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
His4 
histone tail
sufficient binding region
aa 12-27
His4 
methylation site
sufficient binding region
aa 20

H4K20me1 or H4K20me2

MBT repeats
sufficient binding region
aa 531-980
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait peptide synthesized in vitro; prey derived from wild-type embryonic extract.

Sfmbt binds to His4 histone tail that is monomethylated at Lys 20 (Kd = 8 uM) or dimethylated at Lys 20 (Kd = 12 uM). His4 peptides that are unmodified or trimethylated at Lys 20 bind with over ten-fold reduced affinity. No binding was observed for His4 peptides acetylated at residue Lys 16.

FBrf0208372-1.XC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
His4 

His4

neutral component
His4 

His4

neutral component
His4 
His4 

His4

neutral component
His4 

Sfmbt

neutral component

Sfmbt

neutral component

Sfmbt

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
His4 
histone tail
sufficient binding region
RHRKVLR

peptide was centered on H4K20me1 monomethylated residue

4-MBT-repeat domain
sufficient binding region
aa 535-977
methyl-lysine-binding pocket
necessary binding region
aa 941-948

F941, W944, Y948

methyl-lysine contact
necessary binding region
aa 917

D917A

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; His4 peptide synthesized in vitro; Sfmbt produced as a recombinant fusion protein in bacterial system.

A methylated lysine of a single His4 peptide binds the aromatic pocket in the fourth MBT domain of Sfmbt. Additional contacts are made between Sfmbt and flanking His4 residues.

FBrf0208372-2.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Sfmbt

bait
His4 

H4

prey
His4 
His4 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
His4 
histone tail
sufficient binding region
RHRKVLR

peptide was centered on H4K20me1 monomethylated residue

His4 
methylation site
necessary binding region
aa 20

H4K20me1 or H4K20me2

4MBT domain
sufficient binding region
aa 532-980
methyl-lysine contact
mutation disrupting interaction
aa 917

D917A

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey peptide synthesized in vitro.

Sfmbt binds to various mono- and dimethylated lysines in His3 and His4 with very low micromolar affinity, but not to unmethylated or trimethylated peptides.

The lack of Sfmbt specificity for different His3 and His4 mono- or dimethylated lysine residues observed in this study contrasts with work in Klymenko et al., 2006 (FBrf0190547) and may reflect technical differences.

FBrf0208372-4.FPS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

dSfMBT

bait
His4 

H4

prey

fluorescein label

His4 
His4 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
His4 
histone tail
sufficient binding region
RHRKVLR

peptide was centered on H4K20me1 monomethylated residue

His4 
methylation site
necessary binding region
aa 20

H4K20me1 or H4K20me2

4MBT domain
sufficient binding region
aa 532-980
methyl-lysine contact
mutation disrupting interaction
aa 917

D917A

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait peptide synthesized in vitro; prey produced as a recombinant fusion protein in bacterial system.

Sfmbt binds to various mono- and dimethylated lysines in His3 and His4 with very low micromolar affinity, but not to unmethylated or trimethylated peptides.

The lack of Sfmbt specificity for different His3 and His4 mono- or dimethylated lysine residues observed in this study contrasts with work in Klymenko et al., 2006 (FBrf0190547) and may reflect technical differences.

FBrf0223175-5.ITC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

Sfmbt

bait
His4 

H4

prey
His4 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
His4 
N-terminal region
sufficient binding region

H4K20me1 peptide

4MBT domain
sufficient binding region
aa 531-980
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced as a recombinant fusion protein in bacterial system; prey peptide synthesized in vitro.

Sfmbt and His4 bind with micromolar affinity, Kd = 16.7 uM.

External Crossreferences and Linkouts ( 0 )
References (3)