FB2024_03 , released June 25, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000110410
Interaction Network
Interactions Browser links
His3 network
Cpsf73 network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0235600-7.PD.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
His3 

His3

bait

biotin label

Cpsf73

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait synthesized and labelled in vitro; prey derived from Kc cell nuclear extract.

Interaction abrogated by treatment with 0.1% NP40. Depletion of Slbp decreases interaction.

FBrf0239004-13.AF.WB
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
His3 

H3

bait
His3 

CPSF73

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
His3 
interaction domain
sufficient binding region
GGCGAAUUCGAGCUCGGUACCAAAAAGGCUCUUUUCAGAGCCACCC;ACUGAAUUCAAUGAGAUAAAAUUUUCUGUUGCCGACUAUUUAUAACUUUAAAAAGCCGGAGUAGGCUCGAGUGUAAGCU

125nt from His3 pre-mRNA. 2\'O-methyl modification to prevent cleavage and biotin tag provided by oligo annealed to 3-prime end of His3 pre-mRNA.

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait produced by in vitro transcription; prey derived from Kc nuclear extract.

FBrf0239004-4.AF.MS
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
His3 

H3

bait

biotin tag

His3 

CPSF73

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
His3 
interaction domain
sufficient binding region
CGUACUCUAUAAUCGGUCCUUUUCAGGACCACmAmAmAmCmCAGAUUCAAUGAGAUAAAAUUUUCUGU

63nt from His3 pre-mRNA with 2\'O-methyl modification to prevent cleavage

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; bait commercially synthesized; prey derived from Kc nuclear extract.

External Crossreferences and Linkouts ( 0 )
References (2)