FB2024_02 , released April 23, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000116007
Interaction Network
Interactions Browser links
mir-ban network
Clk network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0209082-1.miR-mRNA.LUC
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note

bantam

bait
Clk 

Clk

prey
Clk 
Clk 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Clk 
3-prime UTR
sufficient binding region
Clk 
ban target sites
necessary binding region
GATCTCA,GGTCTCA,GATCTCT
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was S2 cell line; bait produced from transfected construct; prey produced from transfected reporter construct.

Luciferase reporter assay. Mutation of all three predicted ban binding sites identified in Clk 3-prime UTR renders the Clk reporter unresponsive to an increase in ban levels.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (1)