FB2024_02 , released April 23, 2024
Assay: RNA-Seq_mE4241_AF_mated_1d_head
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General Information
Name
RNA-Seq_mE4241_AF_mated_1d_head
Species
D. melanogaster
Assay type
FlyBase ID
FBlc0001358
Project
Data Provider
Title
RNA-Seq of D. melanogaster, Oregon-R-modENCODE strain, adult female (1 day), mated, head.
Biosample Source
Overview
Tissue isolated
Other tissues studied
Cell component
Cell line
Key genes
Methods
Sample preparation

Anaesthetized adults were placed in a 15ml conical tube, flash frozen in liquid nitrogen, then shaken vigorously for 10 seconds. Broken flies were placed on a Petri dish on dry ice and frozen severed heads were removed with forceps to a fresh tube. Flies were processed in groups of 100 animals per dissection. Typically, heads were missing the antennal and maxillary organs, while the mouth-parts were retained.

Biosamples used (1)
Biosample
Type
Title
D. melanogaster, Oregon-R-modENCODE strain, adult female (1 day), mated, head, source for RNA.
Assay Details
Key genes
Protocol

Total RNA was isolated using Trizol, then Qiagen RNeasy spin columns. mRNA was isolated using Dynal oligo(dT) beads, then fragmented using divalent cations under elevated temperature, followed by sequential ligation of RNA linkers to the 5’ and 3’ ends. Next, reverse transcription was performed using a primer complementary to the 3’ linker and PCR was performed using primers complementary to both linkers. ~ 300 bp fragments were isolated from an agarose gel and gel-purified again.

Mode of Assay

Read length (bases):83

The samples were quantitated using a Nanodrop, and loaded onto a flow cell for cluster generation and sequenced on an Illumina Genome Analyzer II using either single read or paired end protocols (Illumina).

Comments
Associated Data
Size
Files
Additional Information
Synonyms and Secondary IDs (3)
Reported As
Symbol Synonym
RNA-Seq_mE4241_AF_mated_1d_head
modENCODE_4241
Name Synonyms
RNA-Seq of D. melanogaster, Oregon-R-modENCODE strain, adult female (1 day), mated, head.
Secondary FlyBase IDs
    References (2)