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FB2024_03
,
released June 25, 2024
Tools
Tools Overview & Help
Query by symbols/IDs
Batch Download
Sequence Downloader
ID Validator
Feature Mapper
Search/Browse Portals
QuickSearch
Vocabularies
QueryBuilder
CytoSearch
Interactions Browser
ImageBrowse
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BLAST
JBrowse
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modENCODE RNA-Seq
Overview
RNA-Seq Similarity
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RNA-Seq By Region
JBrowse
Submit Data
Fast-Track Your Paper
Submit Personal Communication
Feedback on Gene Snapshots
Downloads
Overview
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Map Conversion
FTP Site:
Releases (FTP)
Genomes (FTP)
Links
External Resources
Model Organisms (MODs)
Alliance of Genome Resources
BeeBase
DictyBase
EcoCyc
Gramene
MGI
PomBase
Pseudobase
RGD
SGD
TAIR
VectorBase
WormBase
Xenbase
ZFIN
Stock Collections
Bloomington Drosophila Stock Center (BDSC)
FlyORF
Korea Drosophila Resource Center (KDRC)
Kyoto Stock Center
NIG-FLY
Tsinghua Fly Center (THFC)
Vienna Drosophila Resource Center (VDRC)
BDGP
DGRC
DRSC/TRiP
DIS by issue
FlyBook
FlyExpress
Interactive Fly
Virtual Fly Brain
FlyCyc
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Fast-Track Your Paper
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X (formerly Twitter)
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Gene Ontology (GO) Annotation
Nontraditional alleles
Vectors & Constructs
New to Flies?
Video Tutorials
FlyBase For Developers
Macromolecular Complex Report Pages
Gene Toolkit
New Split-GAL4 report pages on FlyBase
Transgenic product class in Gene Reports
DIOPT Version 9.1 Update
Fly Lab List
Previous
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FB2024_03
,
released June 25, 2024
Project: TFiN_protein_interaction_map
J2G
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General Information
Name
TFiN_protein_interaction_map
Species
D. melanogaster
Project type
interactome
FlyBase ID
FBlc0003352
Parent Project
Data Provider
Title
Interaction map generated by purification of 668 transcription-related factors, with identification of copurifying proteins by mass spectrometry.
Accessions
Overview
Description
Project attributes
Biosample type
immortalized cell line
(
Rhee et al., 2014
)
Assay type
affinity purification and mass spectrometry
(
Rhee et al., 2014
)
Reagent type
Result type
protein-protein interaction
(
Rhee et al., 2014
)
Key genes
GO term(s)
SO term(s)
Details
Sample preparation
Protocol
Mode of Assay
Data analysis
Comments
Files
Additional Information
Related Datasets
Biosamples generated (1)
Export to HitList
Biosample
Type
Title
BS_S2R+_TFIN
immortalized cell line
D. melanogaster, S2R+ cell line, transiently transfected with bait protein, source for TFIN affinity purifications.
Raw data generated (1)
Export to HitList
Assay
Type
Title
AP-MS_TFiN
affinity purification and mass spectrometry
Coaffinity purification of proteins interacting with transcription-related factors, identification by mass spectrometry, S2R+ cells.
Processed data (3)
Export to HitList
Result
Type
Title
TF_Interaction_Network-1
protein-protein interaction
Minimally filtered pairwise bait-prey interactions derived from hundreds of affinity purifications.
TF_Interaction_Network-2
protein-protein interaction
624 high-confidence co-complex membership interactions (2% FDR) involving 647 proteins, 229 of which are transcription factors.
TFiN_clusters
protein-protein interaction
171 putative protein complexes comprising 647 proteins, derived from TFiN interactions.
Synonyms and Secondary IDs (2)
Reported As
Symbol Synonym
TFiN_protein_interaction_map
Name Synonyms
Interaction map generated by purification of 668 transcription-related factors, with identification of copurifying proteins by mass spectrometry.
(
Rhee et al., 2014
)
Secondary FlyBase IDs
References (2)
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General Information
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Synonyms and Secondary IDs
References