FB2024_03 , released June 25, 2024
Reference Report
Open Close
Reference
Citation
Riddle, N.C., Leung, W., Haynes, K.A., Granok, H., Wuller, J., Elgin, S.C. (2008). An investigation of heterochromatin domains on the fourth chromosome of Drosophila melanogaster.  Genetics 178(3): 1177--1191.
FlyBase ID
FBrf0205417
Publication Type
Research paper
Abstract
The banded portion of Drosophila melanogaster chromosome 4 exhibits euchromatic and heterochromatic characteristics. Reminiscent of heterochromatin, it contains a high percentage of repetitive elements, does not undergo recombination, and exhibits high levels of HP1 and histone-3 lysine-9 dimethylation. However, in the distal 1.2 Mb, the gene density is typical of euchromatin, and this region is polytene in salivary gland nuclei. Using P-element reporters carrying a copy of hsp70-white, alternative chromatin packaging domains can be distinguished by the eye color phenotype. Mapping studies identified the repetitive element 1360 as a candidate for heterochromatin targeting in the fourth chromosome Hcf region. We report here two new screens using this reporter to look for additional heterochromatin target sites. We confirm that reporter elements within 10 kb of 1360 are usually packaged as heterochromatin; however, heterochromatin packaging occurs in the sv region in the absence of 1360. Analyses of the sequences adjacent to P-element reporters show no simple association between specific repeated elements and transgene expression phenotype on a whole chromosome level. The data require that heterochromatin formation as a whole depends on a more complex pattern of sequence organization rather than the presence of a single sequence element.
PubMed ID
PubMed Central ID
PMC2278077 (PMC) (EuropePMC)
Related Publication(s)
Personal communication to FlyBase

Coordinates for fourth chromosome Dfs from Riddle et al. 2008.
Cook, 2022.7.21, Coordinates for fourth chromosome Dfs from Riddle et al. 2008. [FBrf0254067]

Associated Information
Comments
Associated Files
Other Information
Secondary IDs
    Language of Publication
    English
    Additional Languages of Abstract
    Parent Publication
    Publication Type
    Journal
    Abbreviation
    Genetics
    Title
    Genetics
    Publication Year
    1916-
    ISBN/ISSN
    0016-6731
    Data From Reference
    Aberrations (21)
    Alleles (9)
    Genes (24)
    Natural transposons (11)
    Insertions (81)
    Transgenic Constructs (1)