FB2024_03 , released June 25, 2024
Sequence Feature: Dmel\Dmel:r6:X:6743146:6743208:+
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General Information
Symbol
Dmel\Dmel:r6:X:6743146:6743208:+
Species
D. melanogaster
Feature type
exon_junction
FlyBase ID
FBsf0000125229
Collection
Associated gene
Genomic Location
Chromosome (arm)
X
Sequence location

X:6,743,146..6,743,208 [+]

Genomic Maps
Sequence Data
Length
Comments

Probable GT-AT splice on opposite strand.

(FlyBase Genome Annotators, 2013)

AT..AC

Associated Information
Gene(s) (targeted or local)
    Allele(s)
      Transcripts(s)
        Polypeptide(s)
          Construct
            Experimental Data
            RNA-Seq Read Counts
            Dataset: BCM_1_RNAseq_junctions
            BCM_1_RNAseq_junctions
            Expression stage(s)
            Read Count
            embryonic stage 4 -- 9

            Comment: 2-4 hr, rep1, 75nt reads

            0
            embryonic stage 4 -- 16

            Comment: 2-16 hr, rep1, 75nt reads

            37
            embryonic stage 4 -- 16

            Comment: 2-16 hr, rep2, 100nt reads

            223
            embryonic stage 16

            Comment: 14-16 hr, rep1, 75nt reads

            0
            second instar larval stage -- third instar larval stage

            Comment: 48 to 120 hrs post egg-lay, rep1, 75nt reads

            126
            late third instar larval stage

            Comment: wandering, rep1, 75nt reads

            0
            late third instar larval stage

            Comment: wandering, rep2, 100nt reads

            7
            pupal stage

            Comment: aged 1 to 5 days after collection as third instar larvae, rep1, 75nt reads

            241
            pupal stage P6 -- pharate adult stage P10

            Comment: aged 72 hrs after collection as third instar larvae, rep1, 75nt reads

            0
            adult stage

            Comment: aged 17 days post-eclosion, rep1, 75nt reads

            96
            adult stage | female

            Comment: aged 2-3 days post-eclosion, rep1, 75nt reads

            0
            adult stage | male

            Comment: aged 2-3 days post-eclosion, rep1, 75nt reads

            0
            Total
            730
            Collection Information
            Collection: BCM_1_RNAseq_junctions
            Symbol
            BCM_1_RNAseq_junctions
            Title
            Exon junction identification from RNA-Seq assays of D. melanogaster, Canton-S strain, 10 developmental stages.
            Source and Progenitors
            Species of derivation
            D. melanogaster
            Strain of derivation
            Stage
            Tissue/Position (including subcellular localization)
            Reference
            embryonic stage 4 -- 9
            organism

            Comment: 2-4 hr, rep1, 75nt reads

            (Daines et al., 2011)
            embryonic stage 4 -- 16
            organism

            Comment: 2-16 hr, rep1, 75nt reads

            2-16 hr, rep2, 100nt reads

            (FlyBase Curators, 2016-, Daines et al., 2011)
            embryonic stage 16
            organism

            Comment: 14-16 hr, rep1, 75nt reads

            (Daines et al., 2011)
            second instar larval stage -- third instar larval stage
            organism

            Comment: 48 to 120 hrs post egg-lay, rep1, 75nt reads

            (Daines et al., 2011)
            late third instar larval stage
            organism

            Comment: wandering, rep1, 75nt reads

            wandering, rep2, 100nt reads

            (FlyBase Curators, 2016-, Daines et al., 2011)
            pupal stage
            organism

            Comment: aged 1 to 5 days after collection as third instar larvae, rep1, 75nt reads

            (Daines et al., 2011)
            pupal stage P6 -- pharate adult stage P10
            organism

            Comment: aged 72 hrs after collection as third instar larvae, rep1, 75nt reads

            (Daines et al., 2011)
            adult stage | female
            organism

            Comment: aged 2-3 days post-eclosion, rep1, 75nt reads

            (Daines et al., 2011)
            adult stage
            organism

            Comment: aged 17 days post-eclosion, rep1, 75nt reads

            (Daines et al., 2011)
            adult stage | male
            organism

            Comment: aged 2-3 days post-eclosion, rep1, 75nt reads

            (Daines et al., 2011)
            Vector of progenitor construct
            Description

            Umbrella record for 12 collections that differ by developmental stage, from embryos to aged adults. RNA junctions identified and characterized (presented in GBrowse and in RNA junction reports).

            (Daines et al., 2011.3.30)
            Additional data
            Sample preparation
            Collection preparation
            Mode of assay
            Data analysis
            Cell lines
            Observed in
            Not observed in
            Comments

            Reviewed, but not incorporated into a FlyBase gene model.

            (FlyBase Genome Annotators, 2014)

            Predicted Novel Junction.

            Stocks (0)
            External Crossreferences and Linkouts ( 0 )
            Synonyms and Secondary IDs (3)
            Reported As
            Symbol Synonym
            Dmel:r5:X:6637179:6637241:+
            (FlyBase, 1992-)
            Dmel:r6:X:6743146:6743208:+
            (FlyBase, 1992-)
            X:6637179-6637240
            (Daines et al., 2010.2.8)
            Secondary FlyBase IDs
              References (4)