FlyBase Natural Transposon Report: Dmel\Stalker4

General Information

Symbol

Stalker4

Species

D. melanogaster

Feature type

natural_transposable_element

FlyBase ID

FBte0000151

Sequences and Components

Complete element (bp)

7379

(Kaminker et al., 2002)

Terminal repeat (bp)

Reference sequence

transposon_sequence_set.embl.txt.gz

Component genes

Stalker4\ORF2

Stalker4\ORF1

Sequence Accessions

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AF541949

Sequence Ontology (SO)

Transposon type

LTR_retrotransposon

(Mugnier et al., 2008, Kaminker, 2002.8.29, Kaminker et al., 2002)

transposable_element

(Mugnier et al., 2008, Kaminker et al., 2002)

Insertions and Copy Number

Copy number and comments

2 in euchromatin of Release 3 genome annotation, both of which are full length.

(Kaminker et al., 2002)

Search for

Target Site Duplication

Size (bp)

Orthologs

Curated drosophilid orthologs

Comments

Other Information

Etymology

External Crossreferences and Linkouts ( 1 )

Crossreferences

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

AF541949

Synonyms and Secondary IDs (5)

Reported As

Symbol Synonym

STALKER4

(Zhou et al., 2009)

Stalker 4

(Huang et al., 2021, Kawamura et al., 2008)

Stalker_4

(Saint-Leandre et al., 2020)

stalker4

(Patil et al., 2014, Czech et al., 2013, Ohtani et al., 2013, Malone et al., 2009, Brennecke et al., 2008, Czech et al., 2008, Mugnier et al., 2008, Saito et al., 2006)

Secondary FlyBase IDs

FBgn0063897
FBtp0017050

References (38)

Report Sections