FB2024_03 , released June 25, 2024
Aberration: Dmel\In(3LR)sep
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General Information
Symbol
In(3LR)sep
Species
D. melanogaster
Name
Inversion (3LR) separated
FlyBase ID
FBab0005515
Feature type
chromosomal_inversion
Computed Breakpoints include

65D2-65D3;85F2-85F4

Sequence coordinates
3L:6,925,034..6,925,034 (In(3LR)sep:bk1)
(Miller et al., 2016)
3L:6,926,125..6,926,125 (In(3LR)sep:bk2)
(Miller et al., 2016)
3R:9,943,831..9,943,831 (In(3LR)sep:bk3)
(Miller et al., 2016)
3R:9,944,040..9,944,040 (In(3LR)sep:bk4)
(Miller et al., 2016)
Member of large scale dataset(s)
Nature of Aberration
Cytological Order
Progenitor
Mutagen
Class of aberration (relative to wild type)
chromosomal_inversion
(FlyBase, 2007)
Class of aberration (relative to progenitor)
chromosomal_inversion
(Coyne et al., 1993, Diaz-Benjumea and Garcia-Bellido, 1990, Craymer, 1981)
Breakpoints

65D2-65D3;85F2-85F4

(Craymer, 1981)

65E;85E

(Coyne et al., 1993, Diaz-Benjumea and Garcia-Bellido, 1990)
Causes alleles
vvlsep
(Miller et al., 2020, Certel et al., 2000, de Celis et al., 1995, Lindsley and Zimm, 1992, Diaz-Benjumea and Garcia-Bellido, 1990)
Glut4EFsep
(Miller et al., 2020, Miller et al., 2016, Yazdani et al., 2008)
Carries alleles
kniri-1
pp
Transposon Insertions
Formalized genetic data

vvl << bk1 << sep << bk2

Genetic mapping information
Comments

3L:6925034 (release 6 coordinates) is the 5' end of a breakpoint associated with a deletion of 1090bp of genomic sequence.

(Miller et al., 2016)

3L:6926125 (release 6 coordinates) is the 3' end of a breakpoint associated with a deletion of 1090p of genomic sequence.

(Miller et al., 2016)

3R:9943831 (release 6 coordinates) is the 5' end of a breakpoint associated with a deletion of 208bp of genomic sequence.

(Miller et al., 2016)

3R:9944040 (release 6 coordinates) is the 3' end of a breakpoint associated with a deletion of 208bp of genomic sequence.

(Miller et al., 2016)
Comments on Cytology

Left limit of break 1 from polytene analysis (FBrf0036539) Right limit of break 1 from complementation mapping against vvl (FBrf0084541) Limits of break 2 from polytene analysis (FBrf0036539)

Sequence Crossreferences
DDBJ / EMBL / GenBank
DNA sequence
Protein sequence
Gene Deletion and Duplication Data
Genes Deleted / Disrupted
Complementation Data
Completely deleted / disrupted
vvl
(de Celis et al., 1995)
Partially deleted / disrupted
Molecular Data
Completely deleted
Partially deleted
Genes NOT Deleted / Disrupted
Complementation Data
 
Molecular Data
 
Genes Duplicated
Complementation Data
Completely duplicated
Partially duplicated
Molecular Data
Completely duplicated
Partially duplicated
Genes NOT Duplicated
Complementation Data
 
Molecular Data
 
Affected Genes Inferred by Location
    Phenotypic Data
    In combination with other aberrations
    NOT in combination with other aberrations

    Heterozygotes show lack of veins with a ventral component.

    (Diaz-Benjumea and Garcia-Bellido, 1990)
    Stocks (2)
    Notes on Origin
    Discoverer

    Muller.

     
    Balancer / Genotype Variants of the Aberration
     
    Separable Components
    Other Comments
     

    kniri-1 and pp can be removed only with great difficulty.

    Synonyms and Secondary IDs (4)
    Reported As
    Symbol Synonym
    In(3L)sep
    (Certel et al., 2000)
    In(3LR)Sep
    (Gibert et al., 2002, Coyne et al., 1993)
    In(3LR)sep
    (Miller et al., 2020, Miller et al., 2019, Miller et al., 2016, Tolhuis et al., 2011, Yazdani et al., 2008)
    Name Synonyms
    Inversion (3LR) separated
    Secondary FlyBase IDs
      References (14)