FB2024_03 , released June 25, 2024
Clone: Dmel\SD03848
Open Close
General Information
Symbol
Dmel\SD03848
Species
D. melanogaster
Name
SD03848
FlyBase ID
FBcl0277526
Feature type
Computed gene(s)
 
Collection Status
BDGP
Known Problems
incomplete CDS
FlyBase assessment
    Library
    SD_cDNA
    • SD cDNA library of D. melanogaster, Schneider's Line-2 cells.
    Strain
      Vector
      Tissue Source
      Sequence Data of the Insert
      Full Length Sequence
      Total bases
      3,708
      NCBI
      Full Length sequence dataSequence Downloader
      CTCGTGCCGTGATCTCTGAAGGAGTGACCAAAACGGAGGAGAATGCTGAGGCCGAAATCAAGTTCGGTGATTTTCATGAG
      GATCCACGCAACGACACAGGTTTCATATGCAGCTCCACATGGTCAAGTTCGACGATCAGTAAGGCGGCGGAGGACGACTC
      ATCGCAAAGCAGCAGGAGTGCAGATAATGTGGATTGTGCTCCCAAGGTTGTCGAACAAATTTCTGAAGAGAAGAGCGCAA
      GTAGCACGAAGAGCTCTCCGGTACATAAGGCAACTGGCTCAGGACCGGGGTCCCCCAAAACAAAAGAGCTGAAGTCGAAG
      AGTCCCAGTCCGATTCCAGTTCCTCAGGTTCCCAAAAACTATCGCTACAGCATTGAAACTTTACGTGAGCTTGCCAAGCG
      AAGAGACTCACGTAAGCCACCTATGGTGCCCTGCCAGAAGGGCGACTGCATCTCACAGCTGTTCGTATCGCGCCAGCAGC
      AACCGCAGCAGCACCATGGCCAGCACATCCAGCAATACCAGCATATGAGCTTTAACGAATCATTGGACTATGTGCCCGGG
      AAGCGTGGTCGTGGTCACGGACCCAACAAGAAGCACCACGACCAACATCAGCAAATGGGCGGTTCCAGTGGTATGGGAAG
      TGGAAGTGGCGGAGGAGGTGGAATTTCGAACTCCAGTCAGCGGCACATGGACATTATCCGCGTGCAGCTATCTCTTAAGG
      AGGAGATAAAGCTATCCGAGTGCGAAAATGCGTGGCAGCCGGGTACTCTGCGCCGCGTTTCAATGGCCGGTGGTCAGGAT
      GAAGATGACGATGTCGAGGGAGTACTGAAAAAGGTGCGCGGTATTCTCAACAAACTGACGCCGGATAACTTTGAGGTGCT
      GCTTAAGGAGATGTCCAGTATCAAAATGGACAATGAGGCTAAAATGACAAATGTCATGCTGCTGATCTTCGAGAAGACAA
      TTAGTGAACCGAACTTTGCACCCACATATGCCCGCTTCTGCAAGGTACTTTTCCACGAGATCAAGGCCGAAAACAAGTCT
      CTTTTTACCAGCTCGTTGATCACCCGCATTCAGCATGAATTTGAATCAAATGTAAATGATGCCAACGCAAAGTCCAAGAA
      GCTGCAGCCAACAATGGAGCGCATTAACCAGTGCTCGGACCCAGCTAAAAAAGCCGAACTGCGCGCCGAAATGGAGGATC
      TGGAATACCAGTTCAGACGACGTGCTTGGGGCACTGTTCGTTTCATCGGCGAGCTTTTCAAGCTGCAGTCGCTGACCAAC
      GATCGAGTTCTTAATTGCGTGGAGTCGTTACTCGAACACGGATGTGAGGAGAAACTGGAGTATATGTGCAAGCTACTGAC
      CACAGTGGGTCATTTGTTGGAATCTAGTCTGCCGGAGCACTACCAGCTGAGGGATCGCATTGAAAAGATATTCCGCCGCA
      TCCAGGACATTATAAACCGTTCCCGAGGTACATCGCACCGCCAACAGGTCCACATAAAGATCAGCAGTCGAGTGCGGTTT
      ATGATGCAAGATGTGCTCGACCTGAGGCTACGCAACTGGGATCAGCCAGCCACCCATCAGTCAGGACAGCAGGGCGGACG
      CGGTCAACGACACAAGCAGCACGATGACTCCAAGGATCAGTCCCACAGCACCGGTGGTGGTCGTGGAGGGGGAATGAATC
      AGCACCAGCAGTCGTCGACTCATCACCAGCACCAAAAGCATAATCAGCACGGTCACGATGGCGGAAACTACTTCATGCAG
      AAGATGCCAAACAAACAGCATCACGAAAATCAGACCCTAAGCATAGATCCCAGCAAATTGCGATTTAGCAACAGTAGTGC
      CACCGACGATTCAATTGCTAAGCTAGGCAACTCTTCGCACTACCAGTGGCGCAATGTCGGCAACCGTCCGGTCAGTTCAA
      CGCAAGTAAATGCATCAAATGCGCCTCCGCCTACATCCTTGTTGAAACGGCCAGGGCAAAACTACAAATTCTTGCCGTAT
      CAGCAGCCTTCGGCGGTTGCGGGCACTGCCAATGCACCTGCTGGCGGTAACAAGAGCAATGTGGAAGTAAATGACGCATT
      CGATGGCAAGCAATGTCAGGGGCTAATTACAAAGCTAGTCGAGGAGGCTCTTAACACGCGCGAATGGCAACCGGAGGTCC
      TAAGTATATGGCGTTCGCATAGCGGCTCGCAACAGTCGAAGACTTTGTTCCATTTACTCACGGACTATTTGCACAAGTCT
      ACGGTGAAGCGTCAGCACCGGCAAGCCTGCGGCAATATCTTTGCTTATCTAATGGACAAGGATGCCGTGGAGAAGGAGAT
      TTTTGAAGAAGCCTACTCCCGGTTTGGCGACGATTTTCCTGATCTGCTGGTGGATGTACCAAACGGCTGGGGCTATGTAT
      TCGAGTTCCTGGGGCCCATCATTCACTCGGGCCATTTGGACCTAAAAGATGTTTGGCAGCGGCGCTGGCTTGATGACTTT
      TTCTTTGCCGAGCGTTTTGTGTACGCCTTTGTTAGCTACTTTGTTCAGGAATTCGGAGCCGCCTATGCACGCAAGTTGTG
      GCACAACGATTACAAGCTTGATCGAGGCCAGCTTTTCTGGAGCGACGTGCGCAAGTATCGGGAGTTTGTACAGTCGCACA
      GTTTTTACTTTCTGGACAACGGACCCGGACAAAATCAAGGACATGCCAAAGTTAAGGCGCCCACAACTCCACGTTCGCCG
      GTGGAACATGTAGAGCGGATTAGACACCTGTTAGCAATATCTTGCGACATGGCCATCGACTACATAAACACTAACGTGGC
      CATCAATGACAAGTTTGTGAGGCAGCTCACTAGATTCCTGTGCTGTGATTTCGCCCTGACTGTGATGACAAATACCCACA
      ACAACATCAAAAGCGGCGGCAACTCTAAACCGCTGCAGCTGAACACCGAGAGCTTCCGTAGCTGTTGCACTCCACTACTG
      CGACTGTGTATCGACGCCCAGGAGGCGCTGGAGATTGCTTGCATAGACGAGGCTGTGGACGCTCTGCAGCAACACTTTAT
      GACCGAGTACGAGGACGACATGGCTGCCGGCGAAACAATCTGCAGCACGTTCAGCGTTCTGTACGAGAGCGAGGTGATAC
      CCAAGGAGTCGTTCGACAAGTGGTATAAGCTAGAGATGGCACATTCGAGAGCCTACCGTCGCCCATTCATTGACAAACTG
      CGGGGTTTCATCGAGGAGATGTAGCTGACAAAACATTAACCAGCCCATCGGATTGCAGAGAAACAAATAACCACAACGAA
      GCAAACAACCAACCACAAACTGATCCATACGGCAACATCGTTTGAAACCATTCCTTAGACTAGGCGCGGTCGTAGGTGTC
      GAAGTCAAAAACAATACCCAAACGATCATTTTAAAATTTCACATGTCAATCTTACAACACATGGGGTGTCTCTCTAACAC
      ATTTGTTTGTTAGATACGAGGAATATATCTGGCAAAATTAAGATTTGCAAACACATAGTTTGCACGATGACTAGATCAGA
      CGTGATGAAAATTCTTTGTTTTTATACACAGATTTCTTTGGGAACCTAAAACTTATCCATTTCATTTGTATCACAACACG
      TTCCTTAAAAAACTCTAAAGATTATTCCCTTTGTATGACTTGGTCATAATTCAGATAAACATATTTACACATTACTCGTA
      TCAAAAGAATAAAAAAAAAAAAAAAAAA
      
      Library Information (1)
      Library: SD_cDNA
      Description

      Cloned cDNAs prepared from polyadenylated RNA isolated from cultured cells; cell line used was not derived the iso-1 sequenced strain.

      Sample preparation

      For the SD cDNA library, Schneider L2 cells were collected.

      Protocol

      RNA was poly(A)+ selected once. oligo(dT) primed with XhoI site at end of primer for first strand synthesis; EcoRI adapter on 5' ends of clones; size fractionated on Sephacryl S-500--approximately 1-6kb. cDNA directionally cloned into EcoRI/XhoI-digested pOT2 plasmid. ~300,000 colonies were plated out and a mass plasmid DNA prep was done using Qiagen Plasmids containing the cDNA inserts were size selected on Sephacryl S-500 column in order to exclude plasmids with no insert. Early elutions were collected and transformed into DH5 alpha strain (Gibco/BRL).

      Comment
      Reported As
      Symbol Synonyms
      SD
      SD_cDNA
      References (1)
      Review (1)
      Rubin et al., 2000, Science 287(5461): 2222--2224
      A Drosophila complementary DNA resource. [FBrf0127297]
      External Crossreferences and Linkouts ( 2 )
      Linkouts
      DGRC - Stock center for Drosophila cDNAs, vectors, and cell lines
      Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
      Synonyms and Secondary IDs (0)
      Reported As
      Symbol Synonym
      Secondary FlyBase IDs
        References (0)