smi21F
Please see the JBrowse view of Dmel\Pino for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Apparent intron not annotated (FBsf0000175563): may correspond to splicing intermediate.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.45
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Pino using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: maternally deposited
Comment: anlage in statu nascendi
Comment: anlage in statu nascendi
Comment: anlage in statu nascendi
Comment: reported as ventral nerve cord anlage
Comment: Assay specific to Pino-RB transcript (transcript I)
JBrowse - Visual display of RNA-Seq signals
View Dmel\Pino in JBrowse2-2
2-1.7
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
Area matching Drosophila EST AA392519. This EST forms 758bp contig with ESTS AA695318 and AA441243.
Identified during a screen for olfactory mutants.
Source for merge of: smi21F CG4710
Source for merge of: smi21F anon-WO0118547.131
Source for merge of smi21F anon-WO0118547.131 was sequence comparison ( date:051113 ).
Source for identity of: Pino smi21F