FlyBase Gene Report: Dmel\Fatp3

General Information

Symbol

Dmel\Fatp3

Species

D. melanogaster

Name

Fatty acid transport protein 3

Annotation Symbol

CG3394

Feature Type

protein_coding_gene

FlyBase ID

FBgn0034999

Gene Model Status

Current

Stock Availability

12 publicly available

Enzyme Name (EC)

long-chain-fatty-acid--CoA ligase (6.2.1.3)

Gene Summary

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

60C6-60C6

Sequence location

2R:24,294,097..24,298,111 [+]

Recombination map

2-106

RefSeq locus

NT_033778 REGION:24294097..24298111

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (9 terms)

Molecular Function (4 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (4 terms)

CV Term

Evidence

References

enables fatty acid transmembrane transporter activity

inferred from biological aspect of ancestor with PANTHER:PTN001945407

(GO Reference Genome Project, 2011-)

enables long-chain fatty acid transmembrane transporter activity

inferred from biological aspect of ancestor with PANTHER:PTN001945407

(GO Reference Genome Project, 2011-)

enables long-chain fatty acid-CoA ligase activity

inferred from biological aspect of ancestor with PANTHER:PTN001945407

(GO Reference Genome Project, 2011-)

enables very long-chain fatty acid-CoA ligase activity

traceable author statement

(Watkins et al., 2007)

Biological Process (3 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

involved_in fatty acid biosynthetic process

traceable author statement

(Watkins et al., 2007)

involved_in long-chain fatty acid import into cell

inferred from biological aspect of ancestor with PANTHER:PTN001945407

(GO Reference Genome Project, 2011-)

involved_in long-chain fatty acid metabolic process

inferred from biological aspect of ancestor with PANTHER:PTN001945407

(GO Reference Genome Project, 2011-)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

is_active_in endoplasmic reticulum membrane

inferred from biological aspect of ancestor with PANTHER:PTN001186241

(GO Reference Genome Project, 2011-)

is_active_in plasma membrane

inferred from biological aspect of ancestor with PANTHER:PTN001945407

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

SLC27 FAMILY OF FATTY ACID TRANSPORTERS

ACYL-COA SYNTHETASES

Protein Family (UniProt)

Protein Signatures (InterPro)

Catalytic Activity (EC/Rhea)

long-chain fatty acid transmembrane transporter activity
RHEA 39283: long-chain fatty acid-CoA ligase activity

a long-chain fatty acid + ATP + CoA = a long-chain fatty acyl-CoA + AMP + diphosphate (6.2.1.3)

RHEA 15421: very long-chain fatty acid-CoA ligase activity
RHEA 54536:

Summaries

Gene Group (FlyBase)

SLC27 FAMILY OF FATTY ACID TRANSPORTERS -: Solute carrier family 27 (SLC27) members are fatty acid transmembrane transporters. These proteins enhance the uptake of long-chain and very long chain fatty acids into the cells. (Adapted from FBrf0230430, PMID:26416577 and PMID:12856180).
ACYL-COA SYNTHETASES -: Acyl-coenzyme A (CoA) synthetases catalyze the "activation" of fatty acids by their thioesterification to CoA. This is the initial reaction in fatty acid metabolism, allowing their participation in many fundamental anabolic and catabolic pathways. (Adapted from FBrf0237395).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Fatp3 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q8SXR7)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.52

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Fatp3-RA

FBtr0072268

NM_166666

2308

687

Fatp3-RB

FBtr0072269

NM_138062

2357

661

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

Fatp3-PA

FBpp0072175

76.6

687

8.18

FBpp0072176

73.6

661

8.57

Q9W185

NP_611906

AAM68309

Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Fatp3 using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

1.22

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 4 -- 6

organism

Comment: rapidly degraded

(Fisher et al., 2012)

embryonic stage 11 -- 12

amnioserosa

(Fisher et al., 2012)

procrystal cell

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

embryonic stage 13 -- 16

embryonic/larval crystal cell

(Fisher et al., 2012)

dorsal pharyngeal muscle cell

(Fisher et al., 2012)

embryonic Malpighian tubule

(Fisher et al., 2012)

embryonic/larval lymph gland

(Fisher et al., 2012)

embryonic/larval muscle system

(Fisher et al., 2012)

embryonic/larval posterior spiracle

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\Fatp3 in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Fatp3

View exonic expression by tissue for Dmel\Fatp3

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0034999

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

37887/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0034999

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0034999

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0034999

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3394

Flygut - An atlas of the Drosophila adult midgut

FBgn0034999

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\Fatp3

Stages(s) 1-3
Stages(s) 4-6
Stages(s) 7-8
Stages(s) 9-10
Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 1 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 7 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Fatp3

Transgenic constructs containing regulatory region of Fatp3

Aberrations (Deficiencies and Duplications) ( 2 )

Inferred from experimentation ( 2 )

Gene disrupted in

Df(2R)Exel6082

(Ryder, 2004.4.26)

Df(2R)Exel6281

(Ryder, 2004.4.26)

Inferred from location ( 0 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Fatp3^GD2203

viable, with Scer\GAL4^pnr-MD237

Fatp3^GD2203

viable, with Scer\GAL4^tin.CΔ4

Fatp3^GD2203

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (24)

Hsap\SLC27A1

11 of 14

Yes

Hsap\SLC27A4

11 of 14

Yes

Hsap\SLC27A2

7 of 14

Yes

Hsap\SLC27A6

7 of 14

Yes

Hsap\SLC27A3

6 of 14

Yes

Hsap\SLC27A5

5 of 14

Yes

2 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (17)

Rnor\Slc27a1

10 of 14

Yes

Rnor\Slc27a4

10 of 14

Yes

Rnor\Slc27a2

7 of 14

Yes

Rnor\Slc27a3

6 of 14

Yes

Rnor\Slc27a6

6 of 14

Yes

Rnor\Slc27a5

5 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Mus musculus (laboratory mouse) (18)

Mmus\Slc27a1

10 of 14

Yes

Mmus\Slc27a4

9 of 14

Mmus\Slc27a2

7 of 14

Yes

Mmus\Slc27a6

7 of 14

Yes

Mmus\Slc27a3

6 of 14

Yes

Mmus\Slc27a5

5 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Xenopus tropicalis (Western clawed frog) (12)

Xtro\slc27a4

5 of 13

Yes

4 of 13

3 of 13

3 of 13

3 of 13

2 of 13

Yes

Xtro\aacs

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Danio rerio (Zebrafish) (19)

Drer\slc27a1a

10 of 14

Yes

Drer\slc27a4

10 of 14

Yes

Drer\slc27a1b

9 of 14

Drer\slc27a2a

7 of 14

Yes

Drer\slc27a2b

7 of 14

Yes

Drer\zgc:158482

7 of 14

Yes

Drer\slc27a6

5 of 14

Yes

Drer\zgc:101540

5 of 14

Drer\LOC568883

4 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (16)

Cele\acs-20

13 of 14

Yes

11 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Anopheles gambiae (African malaria mosquito) (18)

Agam\AgaP_AGAP010870

12 of 12

Yes

6 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (32)

Atha\AAE1

2 of 13

Yes

Atha\AAE5

2 of 13

Yes

Atha\AAE7

2 of 13

Yes

Atha\AAE12

2 of 13

Yes

Atha\AT1G21530

2 of 13

Yes

Atha\AT1G21540

2 of 13

Yes

Atha\AT1G75960

2 of 13

Yes

Atha\AT1G76290

2 of 13

Yes

Atha\AT2G17650

2 of 13

Yes

Atha\AT5G16340

2 of 13

Yes

Atha\BZO1

2 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Saccharomyces cerevisiae (Brewer's yeast) (4)

Scer\FAT1

10 of 13

Yes

Scer\ACS1

1 of 13

Scer\ACS2

1 of 13

Scer\PCS60

1 of 13

Schizosaccharomyces pombe (Fission yeast) (1)

Spom\SPCC1827.03c

1 of 12

Yes

Escherichia coli (enterobacterium) (3)

Ecol\caiC

2 of 11

Yes

Ecol\fadD

1 of 11

Ecol\fadK

1 of 11

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:Fatp3. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (23)

10 of 13

10 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

bgm

1 of 13

CG3961

1 of 13

CG6178

1 of 13

CG6432

1 of 13

hll

1 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

SLC27A1; solute carrier family 27 member 1

11 of 14

600691

SLC27A4; solute carrier family 27 member 4

11 of 14

604194

ICHTHYOSIS PREMATURITY SYNDROME; IPS

SLC27A2; solute carrier family 27 member 2

7 of 14

603247

SLC27A6; solute carrier family 27 member 6

7 of 14

604196

SLC27A3; solute carrier family 27 member 3

6 of 14

604193

SLC27A5; solute carrier family 27 member 5

5 of 14

603314

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Other Interaction Browsers

Summary of Genetic Interactions

esyN Network Diagram

Other Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

63461

DroID - A comprehensive database of gene and protein interactions.

FBgn0034999

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyCyc Pathways - Pathways from a BioCyc PGDB for Dmel

Reactome Metabolic Pathways - An open-source, open access, manually curated and peer-reviewed metabolic pathway database.

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-106

Cytogenetic map

60C6-60C6

Sequence location

2R:24,294,097..24,298,111 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

60C6-60C6

Limits computationally determined from genome sequence between P{lacW}Nop60B^k05318 and P{PZ}bs⁰³²⁶⁷&P{lacW}l(2)k10502^k10502

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

2-106

(FlyBase, 2016)

2-110.5

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (12)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

74263

w¹¹¹⁸; P{VT021799-p65.AD}attP40

75463

w¹¹¹⁸; P{VT021799-GAL4.DBD}attP2

87493

w¹¹¹⁸; P{VT021799-p65.AD}attP40; P{VT024016-GAL4.DBD}attP2

87671

w¹¹¹⁸; P{VT044650-p65.AD}attP40; P{VT021799-GAL4.DBD}attP2

88073

w¹¹¹⁸; P{VT033629-p65.AD}attP40/CyO; P{VT021799-GAL4.DBD}attP2

83563

y¹ sc^* v¹ sev²¹; P{TKO.GS04377}attP40

99966

y¹ w^*; TI{CRIMIC.TG4.0}Fatp3^{CR02254-TG4.0}/SM6a

56032

y¹ sc^* v¹ sev²¹; P{TRiP.HMC04340}attP2

Korea

12388

P{VT021799-GAL4}attP2

NIG-Fly

2RG-1025

y² VhaAC39-1^cho-1 v¹; P{U6-Fatp3.NIG.sgRNA}attP40/CyO

VDRC

v3621

w¹¹¹⁸; P{GD2203}v3621

v342867

P{hsFLP}1, y1 w1118; P{HD_CFD02337}attP40/CyO-GFP

Genomic Clones (15)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (40)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

RE52015

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0034999

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0034999

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Relationship to Other Genes

Source for database merge of

Additional comments

Nomenclature History

Source for database identify of

Source for identity of: Fatp3 CG3394

(FlyBase, 2017-)

Nomenclature comments

Featherstone, 2011 (FBrf0214274) identifies two SLC27/FATP genes: 'Fatp' (CG46149) and CG30194 (now called CG44252). Dourlen et al., 2015 (FBrf0230430) identify three D. melanogaster FATP genes: 'Fatp' (CG46149), CG30194 (i.e. CG44252) and CG3394. Orthology searches using human FATP genes confirm these three D. melanogaster hits. Therefore, re-named 'Fatp' as 'Fatp1', and CG44252 and CG3394 as 'Fatp2' and Fatp3', respectively.

(FlyBase, 2017-)

Etymology

Synonyms and Secondary IDs (4)

Reported As

Symbol Synonym

CG3394

(Lee et al., 2023, National Institute of Genetics Fly Stocks, 2022-, Ge et al., 2019, Prudêncio et al., 2018, Transgenic RNAi Project members, 2017-, Dourlen et al., 2015, Geisbrecht et al., 2013, Japanese National Institute of Genetics, 2012.5.21, Kong et al., 2010, Ni et al., 2010.12.1, Watkins et al., 2007)

Fatp3

(Ceder and Fredriksson, 2022, Hultmark and Andó, 2022, Li et al., 2022, Gene Disruption Project members, 2018-)

cg3394

(Mazina et al., 2021, Mazina et al., 2020)

Name Synonyms

Fatty acid transport protein 3

Secondary FlyBase IDs

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 61 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

37887

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q8SXR7

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q8SXR7

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0034999

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

37887/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0034999

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0034999

FlyMine - An integrated database for Drosophila genomics

FBgn0034999

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG3394

MARRVEL_MODEL - MARRVEL (model organism gene)

37887

Linkouts

BioGRID - A database of protein and genetic interactions.

63461

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0034999

DroID - A comprehensive database of gene and protein interactions.

FBgn0034999

DRSC - Results frm RNAi screens

FBgn0034999

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0034999

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0034999

FlyCyc Pathways - Pathways from a BioCyc PGDB for Dmel

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3394

Flygut - An atlas of the Drosophila adult midgut

FBgn0034999

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0034999

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC009593

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Reactome Metabolic Pathways - An open-source, open access, manually curated and peer-reviewed metabolic pathway database.

References (47)

The following external sites may use different assemblies or annotations than FlyBase.

1.22

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