FB2024_03 , released June 25, 2024
Physical Interaction report
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General Information
Interaction Type
Interacting Genes
FlyBase ID
FBig0000095313
Interaction Network
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N network
Ser network
esyN Network Diagram
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Protein
RNA
Selected Interactor(s)
Common Interactor(s)
Reported Interactions
FBrf0053391-2.BA.FM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
N 

N

bait
N 
N 
Ser 

Ser

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
N 
EGF repeats 11 and 12
sufficient binding region
N 
EGF repeats 11 and 12
necessary binding region
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was intact S2 cells; bait produced from transfected construct; prey produced from transfected construct.

The N-Ser interaction requires Ca[2+].

S2 cells expressing N were mixed with S2 cells expressing Ser, and the formation of cell clusters containing both N and Ser expressing cells was assayed by immunofluorescence.

FBrf0111069-7.coIP.WB
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Ser 

Ser

bait
N 

N

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of wild-type fly line; bait produced from endogenous gene; prey produced from endogenous gene.

FBrf0202801-2.PD.TV
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
N 

Notch

bait

FLAG tag

N 
Ser 

Ser

prey

AP tag

Ser 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
N 
36 EGF domains
sufficient binding region
aa 66-1452
Ser 
DSL motif, all EGF domains and the von Wildebrand type C domain
sufficient binding region
aa 1-1213
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Binding of N to Ser is decreased in the presence of expressed fng.

Interaction in vitro; bait and prey produced as a recombinant fusion proteins in S2 cells

FBrf0202801-4.AT.TV
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Ser 

Ser

bait
N 

Notch

prey

AP tag

N 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
N 
EGF domains
sufficient binding region
aa 1-1467
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Binding of N to Ser is decreased in the presence of expressed fng.

ligand expressed on the surface of S2 cells (bait), AP tagged N purified from transfected S2 cells (prey).

FBrf0208112-1.AF.TV
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
Ser 

Serrate

bait
N 

N

prey

AP tag

N 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
N 
EGF module 25
mutation decreasing interaction
aa 999

C999Y

Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Interaction in vitro; proteins produced from transfected constructs.

Coexpression of fng with N disrupts the N-Ser interaction.

FBrf0210603-1.CA
Reference
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
N 

N

bait
Ser 

Ser

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was two separate S2 cell lines, one transfected with a tagged N construct and the other with a tagged Ser construct.

Cell-aggregation assay.

FBrf0220110-1.AT.TV
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
N 

N

bait

fused to mammalian CD2 transmembrane domain

N 
N 
Ser 

Ser

prey

alkaline phosphatase tag

Ser 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
N 
EGF repeat-8
mutation disrupting interaction
aa 361

V361M, corresponds to N[jigsaw] allele

N 
extracellular domain
sufficient binding region
Ser 
extracellular domain
sufficient binding region
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Alkaline-phosphatase-tagged Ser was collected from conditioned media and mixed with S2 cells expressing N. After extensive washing of cells, the amount of alkaline phosphatase bound to cells was measured.

Source was cell extract of S2 cell line; bait produced from transfected construct; prey produced from transfected construct.

The interaction of N with Ser is disrupted by the V361M mutation. However, this same mutation slightly increases binding of N to Dl.

FBrf0221264-1.BA
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
N 

N

neutral component

EGFP tag

N 

N

neutral component

EGFP tag

N 

N

neutral component

EGFP tag

Ser 

Ser

neutral component

Tomato tag

Ser 

Ser

neutral component

Tomato tag

Ser 

Ser

neutral component

Tomato tag

Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was live S2R+ cells; proteins produced from transfected constructs.

Physical interaction of proteins expressed on the surface of cells is inferred from the aggregation of live cells.

Assay: cell aggregation. Expression of cis-Ser in the N cells competes with N interaction with trans-expressing Ser cells.

FBrf0223182-2.coIP.WB
Description
physical association
Collection
Cell line used
Participants
Corresponds to
Reported as
Role
Note
N 

Notch

bait

GFP tag

Ser 

Ser

prey
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was embryos of transgenic fly line; bait produced from tagged transgenic construct; prey produced from endogenous gene.

N, cno and Ser colocalize at the apical side of neuroepithelial cells, at the interface with surrounding glia.

FBrf0244020-2.AT.FM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
N 

N

bait

fused to CD2

N 
N 
N 
N 
Ser 

Ser

prey

Myc, His tag

Ser 
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
N 
EGF repeats 1-36
sufficient binding region
N 
EGF repeat 12 residue 502
mutation increasing interaction
aa 502

S502A

N 
EGF repeat 8 residue 348
mutation decreasing interaction
aa 348

T348V

N 
EGF repeat 9 residue 386
mutation decreasing interaction
aa 386

T386V

Ser 
extracellular domain
sufficient binding region
aa 1-1213
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Co-expression of fng with N decreased Ser binding; fng glycosyltransferase activity was required for decrease; mutation of N O-fucosylation site, T348V, abolishes fng mediated reduction of N-Ser binding.

Source was live S2 cells; bait produced from transfected construct; prey purified from medium of transfected cells.

FBrf0244020-4.BA.FM
Description
physical association
Collection
Source/Stage
Cell line used
Participants
Corresponds to
Reported as
Role
Note
N 

N

neutral component
N 

N

neutral component
N 

N

neutral component
Ser 

Ser

neutral component
Ser 

Ser

neutral component
Ser 

Ser

neutral component
Experimental entities
Corresponds to
Identifier
Reported
Role
Note
Subregions with role in interaction
Corresponds to
Description
Role
Coordinates
Note
Isoform-specific participants
Corresponds to
Description
Role
Note
Comments concerning this interaction

Source was live S2 cells; proteins produced from transfected constructs.

Physical interaction of proteins expressed on the surface of cells is inferred from the aggregation of live cells. Co-expression of N in the same cells as Ser interferes with aggregation with N expressing cells. This interference is overcome by coexpressing fng with N and Ser.

External Crossreferences and Linkouts ( 1 )
Linkouts
MIST - An integrated Molecular Interaction Database
References (9)