FlyBase Gene Report: Dmel\ZnT35C

General Information

Symbol

Dmel\ZnT35C

Species

D. melanogaster

Name

Zinc transporter 35C

Annotation Symbol

CG3994

Feature Type

protein_coding_gene

FlyBase ID

FBgn0028516

Gene Model Status

Current

Stock Availability

11 publicly available

Gene Summary

Zinc transporter 35C (ZnT35C) encodes a protein involved in cellular and organismal zinc efflux that plays a major role in the detoxification of zinc excess. ZnT35C is a target of the metal-responsive transcription factor encoded by MTF-1. [Date last reviewed: 2019-03-21] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Gene Group
Interactive Fly

Also Known As

dZnT35C, BG:DS07295.1

Key Links

Genomic Location

Cytogenetic map

35C4-35C5

Sequence location

2L:15,228,728..15,247,714 [-]

Recombination map

2-51

RefSeq locus

NT_033779 REGION:15228728..15247714

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (12 terms)

Molecular Function (3 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

enables zinc efflux transmembrane transporter activity

inferred from genetic interaction with FLYBASE:Zip71B; FB:FBgn0036461

(Yin et al., 2017)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

enables monoatomic cation transmembrane transporter activity

inferred from electronic annotation with InterPro:IPR002524

(InterPro Project Members, 2004-)

enables zinc ion transmembrane transporter activity

inferred from biological aspect of ancestor with PANTHER:PTN000169409

(GO Reference Genome Project, 2011-)

inferred by curator from GO:0016324

(Lye et al., 2013)

Biological Process (6 terms)

Terms Based on Experimental Evidence (4 terms)

CV Term

Evidence

References

involved_in detoxification of zinc ion

inferred from mutant phenotype

(Yin et al., 2017, Lye et al., 2013)

involved_in intracellular zinc ion homeostasis

inferred from mutant phenotype

(Yin et al., 2017)

involved_in response to zinc ion

inferred from mutant phenotype

(Yepiskoposyan et al., 2006)

involved_in zinc ion transmembrane transport

inferred from genetic interaction with FLYBASE:Zip71B; FB:FBgn0036461

(Yin et al., 2017)

Terms Based on Predictions or Assertions (4 terms)

CV Term

Evidence

References

involved_in monoatomic cation transport

inferred from electronic annotation with InterPro:IPR002524

(InterPro Project Members, 2004-)

involved_in response to zinc ion

inferred from biological aspect of ancestor with PANTHER:PTN000169310

(GO Reference Genome Project, 2011-)

involved_in transmembrane transport

inferred from electronic annotation with InterPro:IPR002524

(InterPro Project Members, 2004-)

involved_in zinc ion transmembrane transport

inferred from biological aspect of ancestor with PANTHER:PTN000169409

(GO Reference Genome Project, 2011-)

Cellular Component (3 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

located_in apical plasma membrane

inferred from direct assay

(Lye et al., 2013)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

located_in membrane

inferred from electronic annotation with InterPro:IPR002524

(InterPro Project Members, 2004-)

is_active_in plasma membrane

inferred from biological aspect of ancestor with PANTHER:PTN000169409

(GO Reference Genome Project, 2011-)

Gene Group (FlyBase)

SLC30 FAMILY OF ZINC TRANSPORTERS

Protein Family (UniProt)

Protein Signatures (InterPro)

Catalytic Activity (EC/Rhea)

zinc ion transmembrane transporter activity
RHEA 29351:

Summaries

Gene Snapshot

Gene Group (FlyBase)

SLC30 FAMILY OF ZINC TRANSPORTERS -: Solute carrier family 30 (SLC30) or Zinc Transporters (ZnT) proteins transport Zn²⁺ from the cytosol across the plasma membrane or organelle membranes allowing accumulation into intracellular compartments. (Adapted from FBrf0220942).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\ZnT35C for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9V471)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.48

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

ZnT35C-RA

FBtr0080714

NM_135897

1740

472

ZnT35C-RB

FBtr0080715

NM_165105

1812

440

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

ZnT35C-PA

FBpp0080274

51.0

472

6.79

FBpp0080275

48.0

440

6.64

Q8IP48

NP_723901

AAN10893

Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\ZnT35C using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

2.10

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 11 -- 12

Malpighian tubule primordium

(Fisher et al., 2012)

yolk nucleus

(Fisher et al., 2012)

embryonic stage 13 -- 16

dorsal sensory complex proper primordium

Comment: reported as dorsal/lateral sensory complexes

(Fisher et al., 2012)

embryonic main segment of Malpighian tubule

(Fisher et al., 2012)

embryonic Malpighian tubule

(Fisher et al., 2012)

sensory nervous system primordium

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in apical plasma membrane

inferred from direct assay

(Lye et al., 2013)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\ZnT35C in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\ZnT35C

View exonic expression by tissue for Dmel\ZnT35C

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0028516

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

34890/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0028516

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0028516

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0028516

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3994

Flygut - An atlas of the Drosophila adult midgut

FBgn0028516

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\ZnT35C

Stages(s) 1-3
Stages(s) 4-6
Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 9 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 17 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of ZnT35C

Transgenic constructs containing regulatory region of ZnT35C

Aberrations (Deficiencies and Duplications) ( 3 )

Inferred from experimentation ( 3 )

Gene disrupted in

Df(2L)Exel7062

(Ryder, 2004.4.26)

Gene partially disrupted in

Df(2L)PolD3^NR42

(Tritto et al., 2015)

Df(2L)rd9

(Fergestad et al., 2010)

Inferred from location ( 0 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

viable

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

ZnT35C^GD1730

viable, with Scer\GAL4^pnr-MD237

ZnT35C^GD1730

viable, with Scer\GAL4^Tub.PU

Other Phenotypes

Allele

chemical resistant, with Scer\GAL4^Act.PU, ZnT35C^a.UAS

ZnT35C^b.UAS

chemical resistant, with Scer\GAL4^Act.PU, ZnT35C^b.UAS

ZnT35C^a.UAS

chemical sensitive

chemical sensitive, with Scer\GAL4^NP1093

chemical sensitive, with Scer\GAL4^NP3084

ZnT35C^KK112697

chemical sensitive (with Df(2L)rd9)

ZnT35C^11-9

melanotic mass phenotype, with Scer\GAL4^Tub.PU

ZnT35C^UAS.Tag:FLAG

Phenotype manifest in

Allele

melanotic mass, with Scer\GAL4^Tub.PU

ZnT35C^UAS.Tag:FLAG

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (9)

Hsap\SLC30A2

11 of 14

Yes

Hsap\SLC30A3

11 of 14

Yes

Hsap\SLC30A8

10 of 14

Yes

Hsap\SLC30A4

7 of 14

Yes

3 of 14

2 of 14

2 of 14

2 of 14

Yes

Hsap\SLC30A7

2 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (9)

Rnor\Slc30a2

11 of 14

Yes

Rnor\Slc30a3

10 of 14

Rnor\Slc30a8

10 of 14

Yes

Rnor\Slc30a4

8 of 14

Yes

3 of 14

2 of 14

2 of 14

2 of 14

Yes

Rnor\Slc30a7

2 of 14

Mus musculus (laboratory mouse) (9)

Mmus\Slc30a2

11 of 14

Yes

Mmus\Slc30a3

11 of 14

Yes

Mmus\Slc30a8

11 of 14

Yes

5 of 14

3 of 14

2 of 14

2 of 14

2 of 14

Yes

Mmus\Slc30a7

2 of 14

Xenopus tropicalis (Western clawed frog) (12)

Xtro\slc30a2

9 of 13

Yes

Xtro\slc30a8

7 of 13

Yes

3 of 13

2 of 13

2 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

Xtro\slc30a7

1 of 13

Xtro\slc45a3

1 of 13

Yes

Danio rerio (Zebrafish) (10)

Drer\slc30a2

11 of 14

Yes

Drer\slc30a8

9 of 14

Yes

6 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

2 of 14

1 of 14

Yes

Caenorhabditis elegans (Nematode, roundworm) (6)

Cele\cdf-2

12 of 14

Yes

6 of 14

2 of 14

1 of 14

1 of 14

Yes

Cele\toc-1

1 of 14

Yes

Anopheles gambiae (African malaria mosquito) (5)

Agam\AgaP_AGAP009005

12 of 12

Yes

5 of 12

2 of 12

2 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (8)

Atha\MTPA2

12 of 13

Yes

Atha\ZAT

12 of 13

Yes

Atha\MTPA1

11 of 13

Yes

Atha\MTPB1

11 of 13

Yes

Atha\AT2G04620

2 of 13

Atha\AT3G12100

2 of 13

Atha\AT1G33020

1 of 13

Yes

Atha\AT2G47830

1 of 13

Saccharomyces cerevisiae (Brewer's yeast) (5)

Scer\COT1

2 of 13

Yes

Scer\MMT1

2 of 13

Yes

Scer\MMT2

2 of 13

Yes

Scer\MSC2

2 of 13

Yes

Scer\ZRC1

2 of 13

Yes

Schizosaccharomyces pombe (Fission yeast) (2)

Spom\cis4

2 of 12

Yes

Spom\zhf1

2 of 12

Yes

Escherichia coli (enterobacterium) (1)

Ecol\zitB

6 of 11

Yes

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:ZnT35C. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (5)

10 of 13

8 of 13

3 of 13

3 of 13

3 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

SLC30A8; solute carrier family 30 member 8

model of type 2 diabetes mellitus

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 1 )

Allele

Disease

Interaction

References

ZnT35C^KK112697

ameliorates Friedreich ataxia 1

modeled by fh^RNAi.UAS.cAa

(Soriano et al., 2016)

ameliorates xanthinuria

modeled by ry^HMS02827

(Yin et al., 2017)

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

SLC30A2; solute carrier family 30 member 2

11 of 14

609617

ZINC DEFICIENCY, TRANSIENT NEONATAL; TNZD

SLC30A3; solute carrier family 30 member 3

11 of 14

602878

SLC30A8; solute carrier family 30 member 8

10 of 14

611145

TYPE 2 DIABETES MELLITUS; T2D

type 2 diabetes mellitus

SLC30A4; solute carrier family 30 member 4

7 of 14

602095

SLC30A10; solute carrier family 30 member 10

3 of 14

611146

HYPERMANGANESEMIA WITH DYSTONIA 1; HMNDYT1

hypermanganesemia with dystonia 1

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

MIST Molecular Interaction Search Tool

Summary of Genetic Interactions

esyN Network Diagram

Show/hide secondary interactors
(data from AllianceMine provided by esyN)

esyN Network Key:

Suppression

Enhancement

View in Interactions Browser View in MIST tool (external link)

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

ZnT35C

enhanceable

Zip71B

(Yin et al., 2017)

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

MTF-1

suppressible

ZnT35C

(Yepiskoposyan et al., 2006)

suppressible

ZnT35C

(Yin et al., 2017, Chi et al., 2015)

Zip71B

enhanceable

ZnT35C

(Yin et al., 2017, Dechen et al., 2015)

Zip71B

suppressible

ZnT35C

(Dechen et al., 2015)

suppressible

(Lye et al., 2013)

suppressible

(Dechen et al., 2015)

ZnT86D

enhanceable

ZnT35C

(Dechen et al., 2015)

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0028516

MIST (genetic) - An integrated Molecular Interaction Database

34890

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

External Data

Linkouts

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

2-51

Cytogenetic map

35C4-35C5

Sequence location

2L:15,228,728..15,247,714 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

35C4-35C5

Limits computationally determined from genome sequence between P{EP}vig^EP812&P{PZ}stc⁰⁵⁴⁴¹ and P{EP}esg^EP633&P{PZ}esg⁰⁷⁰⁸²

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

2-51

(FlyBase, 2016)

2-48.2

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (11)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

26138

w¹¹¹⁸; Mi{ET1}ZnT35C^MB08945

58594

y¹ w^*; Mi{MIC}ZnT35C^MI12547

43918

y¹ w^*; Mi{MIC}ZnT35C^MI07746/SM6a

39049

y¹ sc^* v¹ sev²¹; P{TRiP.HMS01969}attP40

68007

y¹ sc^* v¹ sev²¹; P{TOE.GS00250}attP40/CyO

59419

y¹ w^67c23; Mi{PT-GFSTF.1}ZnT35C^{MI07746-GFSTF.1}/SM6a

NIG-Fly

HMJ22066

y¹ v¹; P{TRiP.HMJ22066}attP40/CyO

2LG-0281

y² VhaAC39-1^cho-1 v¹; P{U6-ZnT35C.NIG.sgRNA.1}attP40/CyO

2LG-3061

y² VhaAC39-1^cho-1 v¹; P{U6-ZnT35C.NIG.sgRNA.2}attP40/CyO

VDRC

v103263

P{KK112697}VIE-260B

v3836

w¹¹¹⁸ P{GD1730}v3836

Genomic Clones (29)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (28)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0028516

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0028516

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Relationship to Other Genes

Source for database merge of

Additional comments

Nomenclature History

Source for database identify of

Source for identity of: BG:DS07295.1 CG3994

(Kodira, 1999.11)

Source for identity of: ZnT35C CG3994

(Yepiskoposyan et al., 2006)

Nomenclature comments

Etymology

Synonyms and Secondary IDs (8)

Reported As

Symbol Synonym

BG:DS07295.1

(Wang et al., 2004, Ashburner et al., 1999, Ashburner et al., 1999, Ashburner et al., 1999, Ashburner et al., 1999.10.12)

CG3994

(National Institute of Genetics Fly Stocks, 2022-, Yin et al., 2017, Richards and Burke, 2016, Xiao and Zhou, 2016, Chi et al., 2015, Qin et al., 2013, Fergestad et al., 2010, Gan et al., 2010, Georgiev et al., 2010, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Wang et al., 2009, Yepiskoposyan et al., 2006, Wang et al., 2004)

ZNT35C

(Richards and Burke, 2016)

cg3994

(Lye et al., 2012)

dZnT35C

(Calap-Quintana et al., 2018, Monnier et al., 2018, Calap-Quintana et al., 2017, Yin et al., 2017, Xiao and Zhou, 2016, Dechen et al., 2015, Lye et al., 2013, Lye et al., 2012, Lye et al., 2012)

znt35C

(Hu et al., 2020)

Name Synonyms

CG3994

Zinc transporter 35C

Secondary FlyBase IDs

FBgn0027920

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 45 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

34890

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9V471

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9V471

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0028516

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

34890/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0028516

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0028516

FlyMine - An integrated database for Drosophila genomics

FBgn0028516

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG3994

MARRVEL_MODEL - MARRVEL (model organism gene)

34890

Linkouts

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0028516

DroID - A comprehensive database of gene and protein interactions.

FBgn0028516

DRSC - Results frm RNAi screens

FBgn0028516

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0028516

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0028516

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG3994

Flygut - An atlas of the Drosophila adult midgut

FBgn0028516

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0028516

MIST (genetic) - An integrated Molecular Interaction Database

34890

References (74)

The following external sites may use different assemblies or annotations than FlyBase.

2.10

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