FB2024_02 , released April 23, 2024
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Li, H., Janssens, J., De Waegeneer, M., Kolluru, S.S., Davie, K., Gardeux, V., Saelens, W., David, F.P.A., Brbić, M., Spanier, K., Leskovec, J., McLaughlin, C.N., Xie, Q., Jones, R.C., Brueckner, K., Shim, J., Tattikota, S.G., Schnorrer, F., Rust, K., Nystul, T.G., Carvalho-Santos, Z., Ribeiro, C., Pal, S., Mahadevaraju, S., Przytycka, T.M., Allen, A.M., Goodwin, S.F., Berry, C.W., Fuller, M.T., White-Cooper, H., Matunis, E.L., DiNardo, S., Galenza, A., O'Brien, L.E., Dow, J.A.T., FCA Consortium§, , Jasper, H., Oliver, B., Perrimon, N., Deplancke, B., Quake, S.R., Luo, L., Aerts, S., Agarwal, D., Ahmed-Braimah, Y., Arbeitman, M., Ariss, M.M., Augsburger, J., Ayush, K., Baker, C.C., Banisch, T., Birker, K., Bodmer, R., Bolival, B., Brantley, S.E., Brill, J.A., Brown, N.C., Buehner, N.A., Cai, X.T., Cardoso-Figueiredo, R., Casares, F., Chang, A., Clandinin, T.R., Crasta, S., Desplan, C., Detweiler, A.M., Dhakan, D.B., Donà, E., Engert, S., Floc'hlay, S., George, N., González-Segarra, A.J., Groves, A.K., Gumbin, S., Guo, Y., Harris, D.E., Heifetz, Y., Holtz, S.L., Horns, F., Hudry, B., Hung, R.J., Jan, Y.N., Jaszczak, J.S., Jefferis, G.S.X.E., Karkanias, J., Karr, T.L., Katheder, N.S., Kezos, J., Kim, A.A., Kim, S.K., Kockel, L., Konstantinides, N., Kornberg, T.B., Krause, H.M., Labott, A.T., Laturney, M., Lehmann, R., Leinwand, S., Li, J., Li, J.S.S., Li, K., Li, K., Li, L., Li, T., Litovchenko, M., Liu, H.H., Liu, Y., Lu, T.C., Manning, J., Mase, A., Matera-Vatnick, M., Matias, N.R., McDonough-Goldstein, C.E., McGeever, A., McLachlan, A.D., Moreno-Roman, P., Neff, N., Neville, M., Ngo, S., Nielsen, T., O'Brien, C.E., Osumi-Sutherland, D., Özel, M.N., Papatheodorou, I., Petkovic, M., Pilgrim, C., Pisco, A.O., Reisenman, C., Sanders, E.N., Dos Santos, G., Scott, K., Sherlekar, A., Shiu, P., Sims, D., Sit, R.V., Slaidina, M., Smith, H.E., Sterne, G., Su, Y.H., Sutton, D., Tamayo, M., Tan, M., Tastekin, I., Treiber, C., Vacek, D., Vogler, G., Waddell, S., Wang, W., Wilson, R.I., Wolfner, M.F., Wong, Y.E., Xie, A., Xu, J., Yamamoto, S., Yan, J., Yao, Z., Yoda, K., Zhu, R., Zinzen, R.P. (2022). Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly.  Science 375(6584): eabk2432.
FlyBase ID
FBrf0252876
Publication Type
Research paper
Abstract
For more than 100 years, the fruit fly Drosophila melanogaster has been one of the most studied model organisms. Here, we present a single-cell atlas of the adult fly, Tabula Drosophilae, that includes 580,000 nuclei from 15 individually dissected sexed tissues as well as the entire head and body, annotated to >250 distinct cell types. We provide an in-depth analysis of cell type-related gene signatures and transcription factor markers, as well as sexual dimorphism, across the whole animal. Analysis of common cell types between tissues, such as blood and muscle cells, reveals rare cell types and tissue-specific subtypes. This atlas provides a valuable resource for the Drosophila community and serves as a reference to study genetic perturbations and disease models at single-cell resolution.
PubMed ID
PubMed Central ID
PMC8944923 (PMC) (EuropePMC)
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    Language of Publication
    English
    Additional Languages of Abstract
    Parent Publication
    Publication Type
    Journal
    Abbreviation
    Science
    Title
    Science
    Publication Year
    1895-
    ISBN/ISSN
    0036-8075 1095-9203
    Data From Reference